{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "94554902",
   "metadata": {},
   "source": [
    "# Upset Plot"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "fa46a168",
   "metadata": {},
   "source": [
    "## Summary and Format"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "a98f60f9",
   "metadata": {},
   "source": [
    "Generating the data for upset plots is a one step process."
   ]
  },
  {
   "cell_type": "markdown",
   "id": "f42bce2e",
   "metadata": {},
   "source": [
    "Making a post request to "
   ]
  },
  {
   "cell_type": "markdown",
   "id": "df39e069",
   "metadata": {},
   "source": [
    "```\n",
    "http://bindiscover.metabolomics.us:4999/venntableresource/\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "1d0caa35",
   "metadata": {},
   "source": [
    "With the format"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "5992cf6d",
   "metadata": {},
   "source": [
    "```\n",
    "{\n",
    "    \"dropdown_triplet_selection_value\": [\"homo sapiens - Serum - No Disease\",\"homo sapiens - Plasma - No Disease\"], #any triplet from our data\n",
    "    \"slider_percent_present_value\": 80, #any integer from 0 to 100. what percent-obvserved \n",
    "                                        #for a triplet constitutes present\n",
    "    \"toggle_average_true_value\": \"True\", #valid values only True\n",
    "    \"radio_items_filter_value\":\"no_filter\" #valid values \"no_filter\" and \"common\"\n",
    "                                           #if no filter, do nothing unusual\n",
    "                                           #if common, return only compounds present in all\n",
    "                                           #triplets\n",
    "}\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "ab7ddf8b",
   "metadata": {},
   "source": [
    "will yield the core information for the sunburst diagram, eg"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "ca9784e0",
   "metadata": {},
   "source": [
    "```\n",
    "\"[\n",
    "    {\\\"bin\\\": 2, \\\"compound\\\": \\\"alanine\\\", \\\"homo sapiens - Serum - No Disease\\\": 69575947.69588457, \\\"homo sapiens - Plasma - No Disease\\\": 81540624.82164448, \\\"compound_identifier\\\": 2, \\\"bin_type\\\": \\\"known\\\", \\\"english_name\\\": \\\"alanine\\\", \\\"identifier\\\": \\\"QNAYBMKLOCPYGJ-REOHCLBHSA-N\\\"}, \n",
    "    {\\\"bin\\\": 3, \\\"compound\\\": \\\"valine\\\", \\\"homo sapiens - Serum - No Disease\\\": 37329254.94725463, \\\"homo sapiens - Plasma - No Disease\\\": 37080214.40829862, \\\"compound_identifier\\\": 3, \\\"bin_type\\\": \\\"known\\\", \\\"english_name\\\": \\\"valine\\\", \\\"identifier\\\": \\\"KZSNJWFQEVHDMF-BYPYZUCNSA-N\\\"},\n",
    "    ...\n",
    "]\n",
    "```"
   ]
  }
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